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Articles (28)
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1

Spearman Correlation Identifies Statistically Significant Gene Expression Clusters in Spinal Cord Development and Injury

Max Kotlyar, Stefanie Fuhrman, Alan Ableson, Roland Somogyi

Journal:

Neurochemical Research

Année:

2002

Langue:

english

Fichier:

PDF, 234 KB

english, 2002

2

The mammalian-membrane two-hybrid assay (MaMTH) for probing membrane-protein interactions in human cells

Petschnigg, Julia, Groisman, Bella, Kotlyar, Max, Taipale, Mikko, Zheng, Yong, Kurat, Christoph F, Sayad, Azin, Sierra, J Rafael, Usaj, Mojca Mattiazzi, Snider, Jamie, Nachman, Alex, Krykbaeva, Irina,

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.24 MB

english, 2014

3

Retraction: Circulating plant miRNAs can regulate human gene expression in vitro

Pastrello, Chiara, Tsay, Mike, McQuaid, Rosanne, Abovsky, Mark, Pasini, Elisa, Shirdel, Elize, Angeli, Marc, Tokar, Tomas, Jamnik, Joseph, Kotlyar, Max, Jurisicova, Andrea, Kotsopoulos, Joanne, El-Soh

Journal:

Scientific Reports

Année:

2017

Langue:

english

Fichier:

PDF, 403 KB

english, 2017

4

Predicting Protein-Protein Interactions by Association Mining

Max Kotlyar, Igor Jurisica

Journal:

Information Systems Frontiers

Année:

2006

Langue:

english

Fichier:

PDF, 377 KB

english, 2006

5

In Silico Drug Screen in Mouse Liver Identifies Candidate Calorie Restriction Mimetics

Fortney, Kristen, Morgen, Eric K., Kotlyar, Max, Jurisica, Igor

Journal:

Rejuvenation Research

Année:

2012

Langue:

english

Fichier:

PDF, 246 KB

english, 2012

6

Network-based characterization of drug-regulated genes, drug targets, and toxicity

Max Kotlyar, Kristen Fortney, Igor Jurisica

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 1010 KB

english, 2012

7

Inferring the functions of longevity genes with modular subnetwork biomarkers ofCaenorhabditis elegansaging

Kristen Fortney, Max Kotlyar, Igor Jurisica

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 1.15 MB

english, 2010

8

CHIP-MYTH: A novel interactive proteomics method for the assessment of agonist-dependent interactions of the human β2-adrenergic receptor

Kittanakom, Saranya, Barrios-Rodiles, Miriam, Petschnigg, Julia, Arnoldo, Anthony, Wong, Victoria, Kotlyar, Max, Heisler, Lawrence E., Jurisica, Igor, Wrana, Jeffrey L., Nislow, Corey, Stagljar, Igor

Journal:

Biochemical and Biophysical Research Communications

Année:

2014

Langue:

english

Fichier:

PDF, 1.53 MB

english, 2014

9

Integration, visualization and analysis of human interactome

Pastrello, Chiara, Pasini, Elisa, Kotlyar, Max, Otasek, David, Wong, Serene, Sangrar, Waheed, Rahmati, Sara, Jurisica, Igor

Journal:

Biochemical and Biophysical Research Communications

Année:

2014

Langue:

english

Fichier:

PDF, 2.64 MB

english, 2014

10

Comparative systems biology of human and mouse as a tool to guide the modeling of human placental pathology

Cox, Brian, Kotlyar, Max, Evangelou, Andreas I, Ignatchenko, Vladimir, Ignatchenko, Alex, Whiteley, Kathie, Jurisica, Igor, Adamson, S Lee, Rossant, Janet, Kislinger, Thomas

Journal:

Molecular Systems Biology

Année:

2009

Langue:

english

Fichier:

PDF, 386 KB

english, 2009

11

NAViGaTOR: Large Scalable and Interactive Navigation and Analysis of Large Graphs

Djebbari, Amira, Ali, Muhammad, Otasek, David, Kotlyar, Max, Fortney, Kristen, Wong, Serene, Hrvojic, Anthony, Jurisica, Igor

Journal:

Internet Mathematics

Année:

2011

Langue:

english

Fichier:

PDF, 910 KB

english, 2011

12

In silico prediction of physical protein interactions and characterization of interactome orphans

Kotlyar, Max, Pastrello, Chiara, Pivetta, Flavia, Lo Sardo, Alessandra, Cumbaa, Christian, Li, Han, Naranian, Taline, Niu, Yun, Ding, Zhiyong, Vafaee, Fatemeh, Broackes-Carter, Fiona, Petschnigg, Juli

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 1.17 MB

english, 2014

13

Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis of Cancer Gene Signatures and Chemogenomic Data

Fortney, Kristen, Griesman, Joshua, Kotlyar, Max, Pastrello, Chiara, Angeli, Marc, Sound-Tsao, Ming, Jurisica, Igor, Tucker-Kellogg, Greg

Journal:

PLoS Computational Biology

Année:

2015

Langue:

english

Fichier:

PDF, 814 KB

english, 2015

14

Integrated interactions database: tissue-specific view of the human and model organism interactomes

Kotlyar, Max, Pastrello, Chiara, Sheahan, Nicholas, Jurisica, Igor

Journal:

Nucleic Acids Research

Année:

2016

Langue:

english

Fichier:

PDF, 403 KB

english, 2016

15

MYC interaction with the tumour suppressive SWI/SNF complex member INI1 regulates transcription and cellular transformation

Stojanova, Angelina, Tu, William B., Ponzielli, Romina, Kotlyar, Max, Chan, Pak-Kei, Boutros, Paul C., Khosravi, Fereshteh, Jurisica, Igor, Raught, Brian, Penn, Linda Z.

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 1.36 MB

english, 2016

16

ReducedBRCA1transcript levels in freshly isolated blood leukocytes fromBRCA1mutation carriers is mutation specific

Chehade, Rania, Pettapiece-Phillips, Rachael, Salmena, Leonardo, Kotlyar, Max, Jurisica, Igor, Narod, Steven A., Akbari, Mohammad R., Kotsopoulos, Joanne

Journal:

Breast Cancer Research

Année:

2016

Langue:

english

Fichier:

PDF, 1.42 MB

english, 2016

17

Circulating plant miRNAs can regulate human gene expression in vitro

Pastrello, Chiara, Tsay, Mike, McQuaid, Rosanne, Abovsky, Mark, Pasini, Elisa, Shirdel, Elize, Angeli, Marc, Tokar, Tomas, Jamnik, Joseph, Kotlyar, Max, Jurisicova, Andrea, Kotsopoulos, Joanne, El-Soh

Journal:

Scientific Reports

Année:

2016

Langue:

english

Fichier:

PDF, 914 KB

english, 2016

18

Systematic Identification of Oncogenic EGFR Interaction Partners

Petschnigg, Julia, Kotlyar, Max, Blair, Louise, Jurisica, Igor, Stagljar, Igor, Ketteler, Robin

Journal:

Journal of Molecular Biology

Année:

2017

Langue:

english

Fichier:

PDF, 2.47 MB

english, 2017

19

Systematic protein–protein interaction mapping for clinically relevant human GPCRs

Sokolina, Kate, Kittanakom, Saranya, Snider, Jamie, Kotlyar, Max, Maurice, Pascal, Gandía, Jorge, Benleulmi‐Chaachoua, Abla, Tadagaki, Kenjiro, Oishi, Atsuro, Wong, Victoria, Malty, Ramy H, Deineko, V

Journal:

Molecular Systems Biology

Année:

2017

Langue:

english

Fichier:

PDF, 4.13 MB

english, 2017

20

Modeling tumor progression via the comparison of stage-specific graphs

Wong, Serene W.H., Pastrello, Chiara, Kotlyar, Max, Faloutsos, Christos, Jurisica, Igor

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 5.22 MB

english, 2017

21

Reference Module in Materials Science and Materials Engineering || Protein–Protein Interaction Databases

Année:

2018

Langue:

english

Fichier:

PDF, 248 KB

english, 2018

22

[ACM Press the 24th ACM SIGKDD International Conference - London, United Kingdom (2018.08.19-2018.08.23)] Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining - KDD '18 - SDREGION

Wong, Serene W.H., Pastrello, Chiara, Kotlyar, Max, Faloutsos, Christos, Jurisica, Igor

Année:

2018

Langue:

english

Fichier:

PDF, 1.61 MB

english, 2018

23

IID 2018 update: context-specific physical protein–protein interactions in human, model organisms and domesticated species

Kotlyar, Max, Pastrello, Chiara, Malik, Zara, Jurisica, Igor

Journal:

Nucleic Acids Research

Année:

2018

Langue:

english

Fichier:

PDF, 975 KB

english, 2018

24

pathDIP 4: an extended pathway annotations and enrichment analysis resource for human, model organisms and domesticated species

Rahmati, Sara, Abovsky, Mark, Pastrello, Chiara, Kotlyar, Max, Lu, Richard, Cumbaa, Christian A, Rahman, Proton, Chandran, Vinod, Jurisica, Igor

Journal:

Nucleic Acids Research

Année:

2019

Fichier:

PDF, 1.01 MB

2019

25

Physiological Tau Interactome in Brain and Its Link to Tauopathies

Sinsky, Jakub, Majerova, Petra, Kovac, Andrej, Kotlyar, Max, Jurisica, Igor, Hanes, Jozef

Journal:

Journal of Proteome Research

Année:

2020

Fichier:

PDF, 1.61 MB

2020

26

Split Intein-Mediated Protein Ligation for detecting protein-protein interactions and their inhibition

Yao, Zhong, Aboualizadeh, Farzaneh, Kroll, Jason, Akula, Indira, Snider, Jamie, Lyakisheva, Anna, Tang, Priscilla, Kotlyar, Max, Jurisica, Igor, Boxem, Mike, Stagljar, Igor

Journal:

Nature Communications

Année:

2020

Fichier:

PDF, 2.15 MB

2020

27

Extracellular Matrix Injury of Kidney Allografts in Antibody-Mediated Rejection: A Proteomics Study

Clotet-Freixas, Sergi, McEvoy, Caitriona M., Batruch, Ihor, Pastrello, Chiara, Kotlyar, Max, Van, Julie Anh Dung, Arambewela, Madhurangi, Boshart, Alex, Farkona, Sofia, Niu, Yun, Li, Yanhong, Famure,

Journal:

Journal of the American Society of Nephrology

Année:

2020

Fichier:

PDF, 3.02 MB

2020

28

Towards a unified open access dataset of molecular interactions

Porras, Pablo, Barrera, Elisabet, Bridge, Alan, del-Toro, Noemi, Cesareni, Gianni, Duesbury, Margaret, Hermjakob, Henning, Iannuccelli, Marta, Jurisica, Igor, Kotlyar, Max, Licata, Luana, Lovering, Ru

Journal:

Nature Communications

Année:

2020

Fichier:

PDF, 1.63 MB

2020